Time-evolving bundle plots
Bundle-plots illustrate contacts between grouped nodes and are useful for exploring interaction graphs. We have added a time-slider to illustrate the evolution of dynamically changing networks, and added circular layers of color-coded annotations.
The input is a JSON-file with the following format:
{ "edges":[ { {"name1":"TM3.ARG135", "name2":"TM3.ASP134", "frames":[0,1,2,3,4,6,7,8,9]}, {"name1":"TM3.ASP134", "name2":"TM4.TRP161", "frames":[4,5,6,7]}, {"name1":"TM5.TYR223", "name2":"TM3.ARG135", "frames":[4,5,6,9]}, {"name1":"TM5.TYR223", "name2":"TM7.TYR306", "frames":[0,1,2,5,6,7,8]}, {"name1":"TM7.TYR306", "name2":"TM1.VAL54", "frames":[1,4,5,6,7,8]} ] }Here TM3.ARG135 and TM3.ASP134 interacts at times 0 to 4 and 6 to 9. Dot-separated names will be used to cluster vertices and can affect sorting.
Try for example:
- example-salt_bridges.json [1.7MB, raw]
- small-salt_bridges.json [1.7MB, raw]
- mor-active-rep1-wb.json [14MB, raw].
- top7_processed.json [50MB, raw].
- TEST DATA SET [50MB, raw].